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Sync main branch to joss-paper branch #504

Merged
merged 1,205 commits into from
Dec 14, 2023
Merged

Sync main branch to joss-paper branch #504

merged 1,205 commits into from
Dec 14, 2023

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mmore500
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mercere99 and others added 30 commits July 3, 2023 16:25
@mercere99
Started building an IndexSet class to efficiently store many indices.
675e667
@mercere99
Added a _SetBit() helper function to IndexSet
52fadaf
@mercere99
Cleaned up IndexSet conversion to bit representaiton; changed vec to …
6fef73a 
…array.
@emilydolson
more clean-up; add bibliogrpahy
01ebeb6
@emilydolson
Actually commit
b949952
@emilydolson
Actually commit
e94f5e1
@emilydolson
exlude bibliography from replace_tabs
e36d8c0
@emilydolson
Fix formatting
f016027
@emilydolson
Fix tidy
5d6b83b
@emilydolson
Fix doc erros
ed30ec4
@emilydolson
Fix link
3d708a8
@mercere99
Added _ToArray() conversion helper to IndexSet.
062a130
@mercere99
Started building IndexRange and IndexRangeSet structs for IndexSet.
f824733
@mercere99
Some initial functions in place for IndexRange and IndexRangeSet.
1d2c126
@mercere99
Added Has() to IndexRangeSet; improved docs.
2c13371
@mercere99
Added IsConnected() and Append() to IndexRange.
159dc02
@mercere99
Turned IndexRange into a class, added constructors & accessors; added…
5d82fa9 
… IndexRangeSet::Insert()
@mercere99
Added more boilerplate to IndexRange; fleshed out IndexRangeSet::Inse…
3bfe471 
…rt()
@mercere99
Turned IndexRangeSet from struct to proper class.
107cb8b
@mercere99
Added helper functions to clean up IndexRangeSet insertions.
6b5fc5e
@mercere99
Added a IndexRangeSet::Append() that will take a whole range as input.
20989ce
@mercere99
Cleaned up IndexRangeSet::Append() so it takes any range extending pa…
c0ef4df 
…st the end.
@mercere99
Simplified _FindRange() helper function to be slower, but MUCH cleaner.
fd95ffa
@mercere99
Addred IndexRange::Merge(); Cleaned up IndexRangeSet::Insert().
4323a53
@mercere99
Finished IndexRangeSet::Insert(IndexRange in); added IndexRange::Expa…
6b122a5 
…nd()
@mercere99
Cleanup on IndexRangeSet
1b0683e
@mercere99
Added IndexRangeSet::Remove()
6c102e1
@mercere99
Started building IndexBits to handle bit representations
7598ee7
@mercere99
Added first few functions defs to IndexBits
f6414ac
@mercere99
Added a PushFront() member function to Bits.
5ca2918
mmore500 added 28 commits December 7, 2023 21:10
@mmore500
Revert "Temporarily removed Systematics tests..."
fbf27dc 
This reverts commit 42c5d39.
@mmore500
Fix coverage build
155c3c5
@mmore500
Update CI.yml
6771a03
@mmore500
Flex path to doxygen data with glob
d0f557e
@mmore500
Ensure tabs in Makefile
e1b4c29
@mmore500
Seed Random for reproducible tests
5ee3b94
@mmore500
Detect uncommitted changes another way for mac compat
70e4766
@mmore500
Give container deploy step token permisisons
73dffd7
@mmore500
Add diagnostic prints to git status warnings
b570bcc
@mmore500
Update mac git for bugfix?
7f279a6
@mmore500
Bump to v3 checkout
453f7b8
@mmore500
Try manually cleaning after mac clone
33657b9
@mmore500
Fix bad checkout action on mac ci
e24c6c2
@mmore500
Retore deleted includes
3c10ef5
@mmore500
Try bumping checkout action to v4
f392da8
@mmore500
Fix ghcr.io deploy step
1b6e3df
@mmore500
Fix whitespace
80376f7
@mmore500
Try fix ghcr deploy with separate login step
c9f4505
@mmore500
Don’t checkout merge on mac to avoid bug
0c48a51
@mmore500
Fall back to default ref if not pull
fcf613a
@mmore500
Try forcing full depth to fix mac dirty git
07243c4
@mmore500
Drop broken ghcr container deploy
37d337f
@mmore500
Merge remote-tracking branch 'origin/documentation'
8332fef
@mmore500
Fixup boilerplate
508818d
@mmore500
Fixup and test emp::Fraction
2c2f1a5
@mmore500
Merge pull request #498 from devosoft/test-fraction
27f70f0 
Fixup and test emp::Fraction
@mmore500
Release v1.0.0
908c265
@mmore500
Merge branch 'joss-paper' into joss-update
22a75a7
@mmore500 mmore500 merged commit cff341e into joss-paper Dec 14, 2023
15 of 18 checks passed
@mmore500 mmore500 deleted the joss-update branch December 14, 2023 22:18
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5 participants
@mmore500 @mercere99 @emilydolson @amlalejini @FergusonAJ